Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12462649 chr19:9910849 T/A 4.86E-6 497 31.47 33.22 32.9 KM Plot
THCA rs12465676 chr2:510975 A/C 1.72E-5 503 31.67 31.73 27.1 KM Plot
THCA rs12467572 chr2:238400743 G/C 3.08E-9 496 31.4 33.97 44.3 KM Plot
THCA rs12468452 chr2:238413576 C/T 0 497 31.03 33.92 39.2 KM Plot
THCA rs12469812 chr2:238415117 A/G 0 503 34.1 33.97 31.27 KM Plot
THCA rs12478122 chr2:238432760 C/T 3.2E-8 502 31.6 31.4 34.1 KM Plot
THCA rs12489687 chr3:139264338 A/C 4.69E-5 502 31.5 33.8 19.32 KM Plot
THCA rs12491908 chr3:53937699 G/A 2.69E-6 502 31.67 31.4 24.75 KM Plot
THCA rs12493507 chr3:139261618 C/T 4.64E-5 503 31.5 33.63 19.32 KM Plot
THCA rs12496534 chr3:53973124 G/A 1.18E-8 497 31.47 31.77 17.8 KM Plot
THCA rs12541559 chr8:4994167 C/G 0 503 31.67 27.1 5.8 KM Plot
THCA rs12543671 chr8:5042817 G/C 0 495 31.5 33.52 5.8 KM Plot
THCA rs12549807 chr8:4972457 A/T 0 503 31.72 24.53 5.8 KM Plot
THCA rs12574109 chr11:123536211 C/G 1.68E-6 501 31.83 29.95 24.67 KM Plot
THCA rs12574384 chr11:123529882 A/G 3.25E-6 502 31.9 28.85 22.6 KM Plot